Color coded pathogens offer safer food formulation

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6/15/2005- New technology could soon make it cheap and easy to identify food pathogens by tagging them with color-coded probes made out of synthetic tree-shaped DNA.

These tiny "nanobarcodes" fluoresce under ultraviolet light in a combination of colors that can then be read by a computer scanner or observed with a fluorescent light microscope.

The Cornell University research group behind the project likens the technology to a supermarket checkout computer, capable of identifying thousands of different items by scanning barcodes.

"We wanted something that could be done with inexpensive, readily available equipment," said Dan Luo, Cornell University assistant professor of biological engineering. He points out that other methods of identifying biological molecules currently available mostly involve expensive equipment.

The researchers have already tested their system using samples containing various combinations of E. coli and tularemia bacteria, and have found the color codes could clearly distinguish several different pathogens simultaneously.

The technology is similar to a new DNA-based test developed by the ARS (Agricultural Research Center) that makes it possible for the first time to simultaneously identify all of the major head blight pathogens in corn and predict their toxin profiles. At least 16 species of Fusarium can cause head blight, a disease that can reduce yields and contaminate cereals with toxins that can make grain unsafe for food or feed.

The new ARS scientists devised a test that pinpoints nucleotide variations that genetically distinguish one head blight species from another. When a probe matches the DNA in a head blight sample, the DNA is fluorescently labeled and detected using a special camera and a high-power laser, providing unambiguous identification of the head blight pathogen and its toxin potential.

Such developments are making food safer, a fact that is reflected in recent US government safety figures. From 1996 to 2004, the incidence of E. coli O157 infections decreased 42 percent, campylobacter infections fell 31 percent, cryptosporidium dropped 40 percent, and yersinia decreased 45 percent.

"Many [firms] have applied new technologies to reduce or eliminate pathogens and have increased their testing to ensure the effectiveness of control measures," claims the government report.

The development is also testament to the growing importance of nanotechnology in food safety. This emerging new science, which involves the use of materials the size of millionths of a millimetre, has opened new possibilities in monitoring never before imagined, and this latest discovery has the potential to dramatically increase food safety at every stage of the supply chain.

Food safety and the development of early warning systems is a growing area of study given the emphasis on food safety and the perceived threat of terrorism. This is a point emphasised by the Cornell University researchers, who suggest that their nanobarcode technology could also be used in genomic research, clinical diagnosis, drug testing and even monitoring for biological terrorism.

The research is described in a paper, "DNA fluorescence nanobarcodes for multiplexed pathogen detections," that will be published in the July 2005 issue of the journal Nature Biotechnology.

Cornell Researchers Fight Food Poisoning

March 31, 2005
Katie Pollack
Sun Contributor

In an effort to limit acute gastroenteritis, or food poisoning, the second most prevalent household illness, Cornell professors from the department of Population Medicine and Diagnostic Sciences have joined a research team which aims to identify the origin and transmission of pathogens that cause food-related illnesses.

Earlier this month, the United States Department of Agriculture formally announced the formation of the Food Safety Research and Response Network (FSRRN), funded by a $5 million grant from the USDA Cooperative State Research, Education and Extension Service. The research team is comprised of over 50 experts from 18 different campuses across the country.

Among those distinguished researchers are Cornell College of Veterinary Medicine faculty members Yrjo Grohn, epidemiology, chair of Population Medicine and Diagnostic Sciences; Yung-Fu Chang, assistant director of the microbiology section; Ynte Schukken, epidemiology, director of Quality Milk Promotion Services (QMPS); Lorin Warnick, ambulatory and production medicine; Hussni Mohammed, epidemiology; and Linda L. Garrison-Tikofsky, senior extension veterinarian at QMPS.

The initiative focuses on researching the transmission and spread of pathogens in the pre-harvest stage, through four distinct areas of research based on the findings of the American Academy of Microbiology's Pre-Harvest Food Safety Colloquium, which took place in December, 2003. These projects include pre-harvest food safety pathogen detection, surveillance and risk assessment, public health impact of pre-harvest food safety pathogens, microbial ecology of pre-harvest food safety pathogens, and cost-effective intervention strategies for pre-harvest food safety pathogens. While most studies have been done post-harvest, with focus on food science, the new pre-harvest study will focus on veterinary epidemiology, or the causes, distribution, and control of diseases within animals.

Grohn and Warnick along with colleagues at Washington State University are leading the study of how animals become infected with Salmonella and other pathogens. This study coincides with their current research, funded by the National Institute of Health, of the spreading of Salmonella within a herd. Chang is co-leading research on the factors necessary for Campylobacter and Salmonella to colonize in animals.

However, while most researchers in the network are carrying out pathogen research, research specifically funded by the grant has not yet begun.

"The current phase [of the initiative] is that the decision to finalize first year projects is almost completed," said Grohn.

This initiative coincides with the USDA's current exploration of the efficiency of larger grants to a series of institutions, as opposed to its traditionally smaller grants to single institutions. The USDA currently has bestowed 3 large-scale grants at this time.

While Grohn sees the potential for the project "to put together the best combination of people and resources," he also said that researchers have difficulty communicating. Despite monthly conference calls and annual meetings, researchers are not always aware of the progress and undertakings of different divisions within the team.

The research network has the secondary responsibility of modifying its research, at the request of other federal and state agencies, to address any future food related epidemics.